ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features:
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It attempts to calculate the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Oct 20, 2018.
Compatible with Windows XP, Vista, 7, 8, 10. Your free trial lasts for 14 days. Please see the purchase page for licensing. Upgrade from earlier versions is free for licensed users.
Please note: ChromasPro 2 will install separately from versions older than 1.9.9. It is recommended that you uninstall any old version present. See the version history for changes to recent versions.
Clustal X2 Software Download
Question: Download Clustal Omega on Mac OS
5
5.7 years ago by
United States
Hello Everyone,
I have a very basic question. Having little experience in Command Line, I am stumped on practically the first step. I am downloading the following file from the Clustal Omega website:
However, to run this in terminal, I have to install argtable2. So I went and downloaded the following from the website:
I placed both these into a single folder, and in terminal setup the directory to the argtable2 folder via
and typed:
A ton of checks are done which ends like this:
I then set the directory to the clustalO folder and configure and it ends like this:
The INSTALL text file says I should type this line:
I then get the following error:
I try to follow the recommendation as such:
And finally I get the following error, and I am stumped:
Anyone have any ideas as to why this isn't working? Did I download the wrong version of argtable? Am I typing in the wrong commands? Any advice would be thoroughly appreciated.
ADD COMMENT • link • modified 5.7 years ago by Alex Reynolds ♦ 30k • written 5.7 years ago by thorerges • 70
Looks like you either don't have permissions in the argtable dir or the argtable dir has its include elsewhere. Could you paste the output of
ls -lR ~/lab/argtable2-13 please?
ADD REPLY • link written 5.7 years ago by RamRS ♦ 30k
ADD REPLY • link modified 5.7 years ago • written 5.7 years ago by thorerges • 70
So I typed this command in '
ls -lR ~/argtable2-13
I am getting a ton of lines (about 100), is there anything I should be looking for in this?
ADD REPLY • link written 5.7 years ago by thorerges • 70
Try Andreas' solution from below. We can debug further if that doesn't work. I am trying to verify the directory structure and look into your permissions on the argtable directory - especially if you have write and execute permissions on appropriate files. You can either copy paste the output of the command I gave you here or look for permissions by yourself.
Just check if you have a readable 'include' dir within the argtable dir and the argtable dir itself is w+x
ADD REPLY • link written 5.7 years ago by RamRS ♦ 30k
Do you have Xcode and its command-line utilities installed? You may need a C compiler (which is part of Xcode and its command-line utilities). See: https://developer.apple.com/library/ios/technotes/tn2339/_index.html
ADD REPLY • link written 5.7 years ago by Alex Reynolds ♦ 30k
Ok I have tried this approach. I followed this answer to actually get Xcode because I use 10.9.3, basically up until
It looks ok, I get the following output:
I try to configure the clustalo file again and I get the exact same error.
Clustal X2 Download![]()
ADD REPLY • link modified 5.0 years ago • written 5.7 years ago by thorerges • 70
Clustalw Download Linux
2
I'm not really sure what to suggest other than to look at the config.log file and see what's going on there.
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ADD REPLY • link written 5.7 years ago by Alex Reynolds ♦ 30k
Maybe OP has an older version of XCode and needs to install CLT for the latest version? Maybe check
gcc --version ?
ADD REPLY • link written 5.7 years ago by RamRS ♦ 30k
Clustal 2
Please clarify whether you want to compile Clustal Omega or just use it. The download link you provided is for the binary.
Clustal X Software
PS: OP changed link to source code
Clustal Alignment
ADD REPLY • link modified 5.7 years ago • written 5.7 years ago by Andreas • 2.5k
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